neurom.view.plot_tree3d

neurom.view.plot_tree3d(ax, tree, diameter_scale=1.0, linewidth=1.2, color=None, alpha=0.8)[source]

Generates a figure of the tree in 3d.

If the tree contains one single point the plot will be empty since no segments can be constructed.

Parameters:
  • ax (matplotlib axes) – on what to plot
  • tree (neurom.core.Tree or neurom.core.Neurite) – plotted tree
  • diameter_scale (float) – Scale factor multiplied with segment diameters before plotting
  • linewidth (float) – all segments are plotted with this width, but only if diameter_scale=None
  • color (str or None) – Color of plotted values, None corresponds to default choice
  • alpha (float) – Transparency of plotted values