neurom.check.neuron_checks.has_no_narrow_neurite_section

neurom.check.neuron_checks.has_no_narrow_neurite_section(neuron, neurite_filter, radius_threshold=0.05, considered_section_min_length=50)

Check if the neuron has dendrites with narrow sections

Parameters:

• neuron (Neuron) – The neuron object to test
• neurite_filter (callable) – filter the neurites by this callable
• radius_threshold (float) – radii below this are considered narro
• considered_section_min_length (float) – sections with length below
• are not taken into account (this) –

Returns:

CheckResult with result. result.info contains the narrow section ids and their first point