neurom.io.hdf5ΒΆ

Module for morphology HDF5 data loading

Data is unpacked into a 2-dimensional raw data block:

[X, Y, Z, R, TYPE, ID, PARENT_ID]
HDF5.V1 Input row format:
points: [X, Y, Z, D] (ID is position) groups: [FIRST_POINT_ID, TYPE, PARENT_GROUP_ID]

There is one such row per measured point.

Functions

get_version Determine whether an HDF5 file is v1 or v2

Classes

H5 Read HDF5 v1 or v2 files and unpack into internal raw data block