Index

_

__init__() (neurom.core.neuron.BaseSoma method) (neurom.core.neuron.Neuron method) (neurom.core.neuron.SomaA method) (neurom.core.neuron.SomaB method) (neurom.core.neuron.SomaC method) (neurom.core.tree.Tree method)

A

A (neurom.core.neuron.SOMA_TYPE attribute) add_child() (neurom.core.tree.Tree method) all (neurom.core.types.TreeType attribute) angle_3points() (in module neurom.analysis.morphmath) APICAL_DENDRITE (neurom.core.dataformat.POINT_TYPE attribute)

apical_dendrite (neurom.core.types.TreeType attribute) as_point() (in module neurom.core.point) average_points_dist() (in module neurom.analysis.morphmath) AXON (neurom.core.dataformat.POINT_TYPE attribute) axon (neurom.core.types.TreeType attribute)

B

B (neurom.core.neuron.SOMA_TYPE attribute) BASAL_DENDRITE (neurom.core.dataformat.POINT_TYPE attribute) basal_dendrite (neurom.core.types.TreeType attribute)

BaseSoma (class in neurom.core.neuron) bounding_box() (neurom.core.neuron.Neuron method) branch_order() (in module neurom.analysis.morphtree)

C

C (neurom.core.neuron.SOMA_TYPE attribute) checkTreeType() (in module neurom.core.types) COLS (class in neurom.core.dataformat)

count() (neurom.core.point.Point method) CUSTOM (neurom.core.dataformat.POINT_TYPE attribute)

E

END_POINT (neurom.core.dataformat.POINT_TYPE attribute)

F

figure_naming() (in module neurom.view.common) find_tree_type() (in module neurom.analysis.morphtree)

FORK_POINT (neurom.core.dataformat.POINT_TYPE attribute)

G

get_bounding_box() (in module neurom.analysis.morphtree) get_color() (in module neurom.view.common) get_figure() (in module neurom.view.common)

get_tree_type() (in module neurom.analysis.morphtree) get_type() (neurom.core.neuron.SOMA_TYPE static method)

H

has_all_finite_length_segments() (in module neurom.io.check) has_all_finite_radius_neurites() (in module neurom.io.check)

has_sequential_ids() (in module neurom.io.check) has_soma_points() (in module neurom.io.check)

I

i_branch_end_points() (in module neurom.core.tree) i_chain() (in module neurom.core.tree) i_local_bifurcation_angle() (in module neurom.analysis.morphtree) i_neurites() (neurom.core.neuron.Neuron method) i_remote_bifurcation_angle() (in module neurom.analysis.morphtree) i_section_length() (in module neurom.analysis.morphtree) i_section_path_length() (in module neurom.analysis.morphtree) i_section_radial_dist() (in module neurom.analysis.morphtree) i_segment_area() (in module neurom.analysis.morphtree) i_segment_length() (in module neurom.analysis.morphtree) i_segment_meander_angle() (in module neurom.analysis.morphtree) i_segment_radial_dist() (in module neurom.analysis.morphtree) i_segment_radius() (in module neurom.analysis.morphtree) i_segment_volume() (in module neurom.analysis.morphtree) ibifurcation_point() (in module neurom.core.tree) ID (neurom.core.dataformat.COLS attribute) iforking_point() (in module neurom.core.tree)

ileaf() (in module neurom.core.tree) imap_val() (in module neurom.core.tree) index() (neurom.core.point.Point method) INVALID (neurom.core.neuron.SOMA_TYPE attribute) ipostorder() (in module neurom.core.tree) ipreorder() (in module neurom.core.tree) is_bifurcation_point() (in module neurom.core.tree) is_forking_point() (in module neurom.core.tree) is_leaf() (in module neurom.core.tree) is_neurite_segment() (in module neurom.io.check) is_root() (in module neurom.core.tree) isection() (in module neurom.core.tree) isegment() (in module neurom.core.tree) iter() (neurom.core.neuron.BaseSoma method) (neurom.core.neuron.SomaA method) (neurom.core.neuron.SomaB method) (neurom.core.neuron.SomaC method) itriplet() (in module neurom.core.tree) iupstream() (in module neurom.core.tree)

L

local_bifurcation_angle() (in module neurom.analysis.morphtree)

M

make_soma() (in module neurom.core.neuron)

N

n_sections() (in module neurom.analysis.morphtree) NEURITES (neurom.core.dataformat.POINT_TYPE attribute) neurom.analysis (module) neurom.analysis.morphmath (module) neurom.analysis.morphtree (module) neurom.core (module) neurom.core.dataformat (module) neurom.core.neuron (module) neurom.core.point (module) neurom.core.tree (module)

neurom.core.types (module) neurom.exceptions (module) neurom.io (module) neurom.io.check (module) neurom.view (module) neurom.view.common (module) NeuroMError Neuron (class in neurom.core.neuron) NonConsecutiveIDsError

P

P (neurom.core.dataformat.COLS attribute) path_distance() (in module neurom.analysis.morphmath) path_length() (in module neurom.analysis.morphtree) plot_labels() (in module neurom.view.common) plot_legend() (in module neurom.view.common) plot_limits() (in module neurom.view.common) plot_sphere() (in module neurom.view.common) plot_style() (in module neurom.view.common)

plot_ticks() (in module neurom.view.common) plot_title() (in module neurom.view.common) Point (class in neurom.core.point) point_dist() (in module neurom.analysis.morphmath) point_dist2() (in module neurom.analysis.morphmath) POINT_TYPE (class in neurom.core.dataformat) polygon_diameter() (in module neurom.analysis.morphmath)

R

R (neurom.core.dataformat.COLS attribute)

r (neurom.core.point.Point attribute)

S

save_plot() (in module neurom.view.common) section_length() (in module neurom.analysis.morphmath) segment_area() (in module neurom.analysis.morphmath) segment_length() (in module neurom.analysis.morphmath) segment_radial_dist() (in module neurom.analysis.morphmath) segment_radius() (in module neurom.analysis.morphmath) segment_taper_rate() (in module neurom.analysis.morphmath) segment_volume() (in module neurom.analysis.morphmath)

set_tree_type() (in module neurom.analysis.morphtree) SOMA (neurom.core.dataformat.POINT_TYPE attribute) soma (neurom.core.types.TreeType attribute) SOMA_TYPE (class in neurom.core.neuron) SomaA (class in neurom.core.neuron) SomaB (class in neurom.core.neuron) SomaC (class in neurom.core.neuron) SomaError

T

t (neurom.core.point.Point attribute) taper_rate() (in module neurom.analysis.morphmath) Tree (class in neurom.core.tree)

TreeType (class in neurom.core.types) TYPE (neurom.core.dataformat.COLS attribute)

U

UNDEFINED (neurom.core.dataformat.POINT_TYPE attribute)

undefined (neurom.core.types.TreeType attribute)

V

val_iter() (in module neurom.core.tree)

vector() (in module neurom.analysis.morphmath)

X

X (neurom.core.dataformat.COLS attribute)

x (neurom.core.point.Point attribute)

Y

Y (neurom.core.dataformat.COLS attribute)

y (neurom.core.point.Point attribute)

Z

Z (neurom.core.dataformat.COLS attribute)

z (neurom.core.point.Point attribute)