neurom.analysis.morphtreeΒΆ
Basic functions used for tree analysis
These functions all depend on the internal structure of the tree or its different iteration modes.
Functions
branch_order |
Branching order of a tree section | ||
find_tree_type |
Calculates the ‘mean’ type of the tree. | ||
get_bounding_box |
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get_tree_type |
Return a tree’s type | ||
i_local_bifurcation_angle |
Return the opening angle between two out-going segments | ||
i_remote_bifurcation_angle |
Return the opening angle between the last segments of two out-going | ||
i_section_length |
Return an iterator of tree section lengths | ||
i_section_path_length |
Return an iterator of path lengths of tree sections | ||
i_section_radial_dist |
Return an iterator of radial distances of tree sections to a given point | ||
i_segment_area |
return an iterator of tree segment areas | ||
i_segment_length |
return an iterator of tree segment lengths | ||
i_segment_meander_angle |
Return an iterator to a tree meander angle | ||
i_segment_radial_dist |
Return an iterator of radial distances of tree segments to a given point | ||
i_segment_radius |
return an iterator of tree segment radii | ||
i_segment_volume |
return an iterator of tree segment volumes | ||
local_bifurcation_angle |
Return the opening angle between two out-going segments | ||
n_sections |
Return number of sections in tree | ||
path_length |
Get the path length from a sub-tree to the root node | ||
set_tree_type |
Set the type of a tree as ‘type’ attribute |