neurom.analysis.morphtree¶

Basic functions used for tree analysis

These functions all depend on the internal structure of the tree or its different iteration modes.

Functions

branch_order Branching order of a tree section

find_tree_type Calculates the ‘mean’ type of the tree.

returns:	[[xmin, ymin, zmin],

get_tree_type Return a tree’s type

i_local_bifurcation_angle Return the opening angle between two out-going segments

i_remote_bifurcation_angle Return the opening angle between the last segments of two out-going

i_section_length Return an iterator of tree section lengths

i_section_path_length Return an iterator of path lengths of tree sections

i_section_radial_dist Return an iterator of radial distances of tree sections to a given point

i_segment_area return an iterator of tree segment areas

i_segment_length return an iterator of tree segment lengths

i_segment_meander_angle Return an iterator to a tree meander angle

i_segment_radial_dist Return an iterator of radial distances of tree segments to a given point

i_segment_radius return an iterator of tree segment radii

i_segment_volume return an iterator of tree segment volumes

local_bifurcation_angle Return the opening angle between two out-going segments

n_sections Return number of sections in tree

path_length Get the path length from a sub-tree to the root node

set_tree_type Set the type of a tree as ‘type’ attribute